Seeing as a large number of applications for the CM will be embedded systems, probably with a reduced or no GUI, I don't see much need for a huge amount of storage. For the few uses that do require more storage there is the CM3L with the option of external storage and the 16GB version that NEC produce.
Yes and no. There is the CM3L which has no on-board eMMC flash allowing fixed storage or an SD slot to go on the carrier. The is also the 16GB NEC version of the CM3, which has plenty of space for a full, fat Raspbiam.
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