We have an issue whereby when the app loads it appears that the origin of the application is being moved, something around -12px up and maybe -2px to the left. Assuming the origin 0,0 is screen top left, it appears that this is being modified to -2, -12 !
We have added a splash screen to the application (Pink Rectangle with Green borders). This is also part of the same app (built with NetBeans). As you can see with the images below, when the splash loads up, it fits to the window perfectly (800x480), but then when the actual app screens come in they are being moved.
For reference, the FXML files are being styled etc in SceneBuilder.
- Raspberry Pi model 3B+
Touch Screen (7") - official Rasp Pi from OKDO - uses DSI not HDMI
Debian (Build Buster)
JavaFX (most recent version)
SceneBuilder (...)
NetBeans IDE (...)

Any help on this is appreciated!
Jim Burke