geev03
Posts: 174
Joined: Thu Jun 07, 2012 12:40 pm
Location: London, UK

Rasmol - 'Molecular Renderer'

Sat Oct 05, 2019 9:31 am

"..Before RasMol, visualization software ran on graphics workstations that, due to their cost, were less accessible to scholars. RasMol continues to be important for research in structural biology, and has become important in education..."
---- https://en.wikipedia.org/wiki/RasMol

Code: Select all

pi@raspberrypi:~ $ sudo -i
root@raspberrypi:~# apt install rasmol
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following additional packages will be installed:
  chemical-mime-data libaec0 libcbf1 libcneartree7 libcqrlib2 libcvector2
  libhdf5-103 libsz2
Suggested packages:
  gnome-mime-data rasmol-doc
The following NEW packages will be installed:
  chemical-mime-data libaec0 libcbf1 libcneartree7 libcqrlib2 libcvector2
  libhdf5-103 libsz2 rasmol
0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded.
Need to get 2,273 kB of archives.
After this operation, 9,583 kB of additional disk space will be used.
Do you want to continue? [Y/n] 
Get:1 http://archive-bm.raspbian.org/raspbian buster/main armhf chemical-mime-data all 0.1.94-7 [47.4 kB]
Get:2 http://archive-bm.raspbian.org/raspbian buster/main armhf libaec0 armhf 1.0.2-1 [21.3 kB]
Get:3 http://archive-bm.raspbian.org/raspbian buster/main armhf libsz2 armhf 1.0.2-1 [6,640 B]
Get:4 http://archive-bm.raspbian.org/raspbian buster/main armhf libhdf5-103 armhf 1.10.4+repack-10 [1,259 kB]
Get:5 http://archive-bm.raspbian.org/raspbian buster/main armhf libcbf1 armhf 0.9.5.18+dfsg1-1+b1 [293 kB]
Get:6 http://archive-bm.raspbian.org/raspbian buster/main armhf libcvector2 armhf 1.0.4.1-1 [5,160 B]
Get:7 http://archive-bm.raspbian.org/raspbian buster/main armhf libcneartree7 armhf 5.1.1+dfsg1-1 [20.7 kB]
Get:8 http://archive-bm.raspbian.org/raspbian buster/main armhf libcqrlib2 armhf 1.1.4-1 [11.2 kB]
Get:9 http://archive-bm.raspbian.org/raspbian buster/main armhf rasmol armhf 2.7.6.0-1 [607 kB]
Fetched 2,273 kB in 2s (1,328 kB/s)
Selecting previously unselected package chemical-mime-data.
(Reading database ... 157737 files and directories currently installed.)
Preparing to unpack .../0-chemical-mime-data_0.1.94-7_all.deb ...
Unpacking chemical-mime-data (0.1.94-7) ...
Selecting previously unselected package libaec0:armhf.
Preparing to unpack .../1-libaec0_1.0.2-1_armhf.deb ...
Unpacking libaec0:armhf (1.0.2-1) ...
Selecting previously unselected package libsz2:armhf.
Preparing to unpack .../2-libsz2_1.0.2-1_armhf.deb ...
Unpacking libsz2:armhf (1.0.2-1) ...
Selecting previously unselected package libhdf5-103:armhf.
Preparing to unpack .../3-libhdf5-103_1.10.4+repack-10_armhf.deb ...
Unpacking libhdf5-103:armhf (1.10.4+repack-10) ...
Selecting previously unselected package libcbf1:armhf.
Preparing to unpack .../4-libcbf1_0.9.5.18+dfsg1-1+b1_armhf.deb ...
Unpacking libcbf1:armhf (0.9.5.18+dfsg1-1+b1) ...
Selecting previously unselected package libcvector2:armhf.
Preparing to unpack .../5-libcvector2_1.0.4.1-1_armhf.deb ...
Unpacking libcvector2:armhf (1.0.4.1-1) ...
Selecting previously unselected package libcneartree7:armhf.
Preparing to unpack .../6-libcneartree7_5.1.1+dfsg1-1_armhf.deb ...
Unpacking libcneartree7:armhf (5.1.1+dfsg1-1) ...
Selecting previously unselected package libcqrlib2:armhf.
Preparing to unpack .../7-libcqrlib2_1.1.4-1_armhf.deb ...
Unpacking libcqrlib2:armhf (1.1.4-1) ...
Selecting previously unselected package rasmol.
Preparing to unpack .../8-rasmol_2.7.6.0-1_armhf.deb ...
Unpacking rasmol (2.7.6.0-1) ...
Setting up libcvector2:armhf (1.0.4.1-1) ...
Setting up libaec0:armhf (1.0.2-1) ...
Setting up chemical-mime-data (0.1.94-7) ...
Setting up libcneartree7:armhf (5.1.1+dfsg1-1) ...
Setting up libcqrlib2:armhf (1.1.4-1) ...
Setting up libsz2:armhf (1.0.2-1) ...
Setting up libhdf5-103:armhf (1.10.4+repack-10) ...
Setting up libcbf1:armhf (0.9.5.18+dfsg1-1+b1) ...
Setting up rasmol (2.7.6.0-1) ...
update-alternatives: using /usr/bin/rasmol-gtk to provide /usr/bin/rasmol (rasmol) in auto mode
Processing triggers for mime-support (3.62) ...
Processing triggers for hicolor-icon-theme (0.17-2) ...
Processing triggers for gnome-menus (3.31.4-3) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
Processing triggers for man-db (2.8.5-2) ...
Processing triggers for shared-mime-info (1.10-1) ...
Processing triggers for desktop-file-utils (0.23-4) ...

root@raspberrypi:~# 
Attachments
buster_rasmol.jpg
buster_rasmol.jpg (129.32 KiB) Viewed 376 times

User avatar
Gavinmc42
Posts: 4528
Joined: Wed Aug 28, 2013 3:31 am

Re: Rasmol - 'Molecular Renderer'

Sat Oct 05, 2019 11:38 am

Pi4's with OpenGL are pretty good now.
Going to need another forum category - Science?
Grass and QCIS just installed and worked.

I work for an University's Science group, so this sort of stuff is of interest.
While some fancy software is Windows only, I have been able to find open source similar apps that do work now.
We may not be able to replace every science PC with Pi4's :(
Pi4's could be used if no one had any PC to start with :D

RPF's mission is Pi's for Education but I have been using them for Science since 2012.
I had to be very picky for what I used Pi's for, not much of an issue now.
Some stuff does need compiling from source but lots of that works too.
I'm dancing on Rainbows.
Raspberries are not Apples or Oranges

Return to “Raspberry Pi OS”